{
  "_id": "6a17d8fbacfb0bcc41d9b172",
  "Package": "scINSIGHT",
  "Type": "Package",
  "Title": "Interpretation of Heterogeneous Single-Cell Gene Expression Data",
  "Version": "0.1.4",
  "Date": "2022-05-29",
  "Authors@R": "c(person(given = \"Kun\", family = \"Qian\", role = c(\"aut\",\"ctb\",\"cre\"), email = \"Kun_Qian@foxmail.com\", comment = c(ORCID = \"0000-0002-2354-2238\")),\nperson(given = \"Wei Vivian\", family = \"Li\", role = c(\"aut\",\"ctb\"), email = \"vivian.li@rutgers.edu\", comment = c(ORCID = \"0000-0002-2087-2709\")))",
  "Maintainer": "Kun Qian <Kun_Qian@foxmail.com>",
  "Description": "We develop a novel matrix factorization tool named\n'scINSIGHT' to jointly analyze multiple single-cell gene\nexpression samples from biologically heterogeneous sources,\nsuch as different disease phases, treatment groups, or\ndevelopmental stages. Given multiple gene expression samples\nfrom different biological conditions, 'scINSIGHT'\nsimultaneously identifies common and condition-specific gene\nmodules and quantify their expression levels in each sample in\na lower-dimensional space. With the factorized results, the\ninferred expression levels and memberships of common gene\nmodules can be used to cluster cells and detect cell\nidentities, and the condition-specific gene modules can help\ncompare functional differences in transcriptomes from distinct\nconditions. Please also see Qian K, Fu SW, Li HW, Li WV (2022)\n<doi:10.1186/s13059-022-02649-3>.",
  "License": "GPL-3",
  "URL": "https://github.com/Vivianstats/scINSIGHT,\nhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02649-3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-26 05:50:22 UTC",
    "User": "root"
  },
  "Author": "Kun Qian [aut, ctb, cre]\n(<https://orcid.org/0000-0002-2354-2238>), Wei Vivian Li [aut,\nctb] (<https://orcid.org/0000-0002-2087-2709>)",
  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev",
  "Repository": "https://vivianstats.r-universe.dev",
  "Date/Publication": "2022-05-29 06:35:19 UTC",
  "RemoteUrl": "https://github.com/vivianstats/scinsight",
  "RemoteRef": "HEAD",
  "RemoteSha": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
  "MD5sum": "150f77a46acddc07a1bab8b1244afe60",
  "_user": "vivianstats",
  "_type": "src",
  "_file": "scINSIGHT_0.1.4.tar.gz",
  "_fileid": "8cebbe1e23643a2e1956f4914e80b0eaf5263f510ee0b0740387a0373dc48c5c",
  "_filesize": 2358341,
  "_sha256": "8cebbe1e23643a2e1956f4914e80b0eaf5263f510ee0b0740387a0373dc48c5c",
  "_created": "2026-05-26T05:50:22.000Z",
  "_published": "2026-05-29T11:01:40.508Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78231950020,
      "time": 162,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7209843743"
    },
    {
      "job": 78231949948,
      "time": 147,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7209840652"
    },
    {
      "job": 78231950403,
      "time": 155,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7209842333"
    },
    {
      "job": 78231950237,
      "time": 139,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7209839438"
    },
    {
      "job": 78231949916,
      "time": 93,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78231949834,
      "time": 255,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78231950259,
      "time": 129,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7209832947"
    },
    {
      "job": 78231950107,
      "time": 238,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7209854162"
    },
    {
      "job": 78231949955,
      "time": 175,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7209810485"
    },
    {
      "job": 78231949977,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7209834425"
    },
    {
      "job": 78231950009,
      "time": 122,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7209835660"
    },
    {
      "job": 78231949776,
      "time": 62,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78231950155,
      "time": 116,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7209834297"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/vivianstats/scinsight",
  "_commit": {
    "id": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
    "author": "Kun Qian <sldynsqk@gmail.com>",
    "committer": "Kun Qian <sldynsqk@gmail.com>",
    "message": "update description\n",
    "time": 1653806119
  },
  "_maintainer": {
    "name": "Kun Qian",
    "email": "kun_qian@foxmail.com",
    "login": "kunstats",
    "description": "",
    "uuid": 88602523,
    "orcid": "0000-0002-2354-2238"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "RANN",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    }
  ],
  "_owner": "vivianstats",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "bioinformatics",
    "gene-expression",
    "integration",
    "scrna-seq",
    "openblas",
    "cpp"
  ],
  "_stars": 21,
  "_contributors": [
    {
      "user": "sldyns",
      "count": 7,
      "uuid": 25719626
    },
    {
      "user": "vivianstats",
      "count": 4,
      "uuid": 25557722
    }
  ],
  "_userbio": {
    "uuid": 25557722,
    "type": "user",
    "name": "Vivian Li Lab",
    "description": "Statistical and bioinformatics methods developed by the Wei Vivian Li Lab."
  },
  "_downloads": {
    "count": 212,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scINSIGHT"
  },
  "_devurl": "https://github.com/vivianstats/scinsight",
  "_searchresults": 11,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/scINSIGHT.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/vivianstats/scinsight",
  "_realowner": "vivianstats",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-05-03"
    },
    {
      "version": "0.1.1",
      "date": "2021-09-06"
    },
    {
      "version": "0.1.2",
      "date": "2022-01-24"
    },
    {
      "version": "0.1.3",
      "date": "2022-02-03"
    },
    {
      "version": "0.1.4",
      "date": "2022-05-30"
    },
    {
      "version": "0.1.5",
      "date": "2025-10-18"
    }
  ],
  "_exports": [
    "create_scINSIGHT",
    "run_scINSIGHT"
  ],
  "_help": [
    {
      "page": "create_scINSIGHT",
      "title": "Create an scINSIGHT object.",
      "topics": [
        "create_scINSIGHT"
      ]
    },
    {
      "page": "run_scINSIGHT",
      "title": "Perform scINSIGHT on normalized datasets",
      "topics": [
        "run_scINSIGHT"
      ]
    },
    {
      "page": "scINSIGHT-class",
      "title": "The scINSIGHT Class",
      "topics": [
        "scINSIGHT",
        "scINSIGHT-class"
      ]
    }
  ],
  "_readme": "https://github.com/vivianstats/scinsight/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "glue",
    "igraph",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pkgconfig",
    "RANN",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "stringi",
    "stringr",
    "vctrs"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 4.062581984228164,
  "_indexed": true,
  "_nocasepkg": "scinsight",
  "_universes": [
    "vivianstats",
    "kunstats"
  ],
  "_binaries": [
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-03-24T07:41:55.000Z",
      "arch": "aarch64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "ff1291443827760c227b96f77994ac32d1fa66bc9ae479004d219e5b6004246b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/23478301891"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-03-24T07:43:05.000Z",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "bcb015f7e1b538a26f2d6942cb92166bc31e2bbe87e49713875a55542eda191e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/23478301891"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-03-24T07:41:09.000Z",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "0b62598c7ecc802bf895ab819b190298bcc429c5a3723aa9e30529affdb88900",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/23478301891"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-26T05:53:04.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "f9710166859d7e5980ded600870bf3f5cb4b624555abed68f4a55b90ae64aa00",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-26T05:52:52.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "9d47fbc9e10f156c51a30d373061a25e9e7531d927ad34cfcd5472bbf0278b49",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-26T05:52:59.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "865e6cd5b86606ee68a7bef85a22d48805a363cc43fa5d3f65d82d2b5e77134f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-26T05:52:47.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "54f1c665ebb2de9324d3ca68aa763bd80aadae950119b54f0c97be4341ab2be8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-05-26T05:52:26.000Z",
      "arch": "aarch64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "1ca6cf7fee470e37b42eae474226504224b34ac7bddc130eb36a2ffc8934c56d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-05-26T05:53:45.000Z",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "23056f07785e9be349fa5828700b0af97044763cfced3ee0113ea4ac9f500c77",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.4",
      "date": "2026-05-26T05:52:42.000Z",
      "arch": "emscripten",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "2840d235a26848f88358d4074f2a33b69d39c6959fb2ad62619e587be9ce7103",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-05-26T05:51:56.000Z",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "da8bb0b38512d193fc29bb98b32ca99ec3dedf2340864bd6407741ac83e38565",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-05-26T05:51:50.000Z",
      "arch": "x86_64",
      "commit": "8f20e61b6a5a3419d849b1c84e48b13457598c04",
      "fileid": "39386d8aadc877b8870e9d3c3aa06b1ca29e485c02f6b84e722ad9847a35eb44",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/vivianstats/actions/runs/26434775499"
    }
  ]
}