Package: MAAPER 1.1.1
Wei Vivian Li
MAAPER: Analysis of Alternative Polyadenylation Using 3' End-Linked Reads
A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1186/s13059-021-02429-5>.
Authors:
MAAPER_1.1.1.tar.gz
MAAPER_1.1.1.zip(r-4.5)MAAPER_1.1.1.zip(r-4.4)MAAPER_1.1.1.zip(r-4.3)
MAAPER_1.1.1.tgz(r-4.4-any)MAAPER_1.1.1.tgz(r-4.3-any)
MAAPER_1.1.1.tar.gz(r-4.5-noble)MAAPER_1.1.1.tar.gz(r-4.4-noble)
MAAPER_1.1.1.tgz(r-4.4-emscripten)MAAPER_1.1.1.tgz(r-4.3-emscripten)
MAAPER.pdf |MAAPER.html✨
MAAPER/json (API)
| # Install 'MAAPER' in R: |
| install.packages('MAAPER', repos = c('https://vivianstats.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vivianstats/maaper/issues
alternative-polyadenylationbioinformatics-toolrna-seq
Last updated 3 years agofrom:907b16cb8c. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win | OK | Nov 12 2024 |
| R-4.5-linux | OK | Nov 12 2024 |
| R-4.4-win | OK | Nov 12 2024 |
| R-4.4-mac | OK | Nov 12 2024 |
| R-4.3-win | OK | Nov 12 2024 |
| R-4.3-mac | OK | Oct 11 2024 |
Exports:maaper
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsvctrsXMLXVectoryamlzlibbioc
